Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Toolkit for calling structural variants using short or long reads
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
Sync paired-end FASTA/Q files and keep singleton reads
Fake genomes, fake sequencing, real insights.
check paired-end FASTQ data integrity
⚡pORFast - Paired-end ORF Fast extraction
rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads
Legacy repository (https://telatin.github.io/seqfu2)
Simulator of metabarcoding sequencing runs - Glorified ART wrapper
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📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria
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Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.
It splits a fastq file containing R1 and R2 reads.
This script takes advantage of read pairing in bam/cram files to identify the presence of STR extensions.
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